Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs7499903 chr16:8763412 G/A 0 178 25.47 23.53 3.17 KM Plot
PCPG rs7500626 chr16:1734671 G/A 0 173 25.53 18.2 2.93 KM Plot
PCPG rs75110337 chr16:89962635 C/A 0.000157 174 25.87 22.63 36.37 KM Plot
PCPG rs75116202 chr7:105160059 C/T 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs75137110 chr8:121463924 A/G 4.57E-6 177 27.2 25 19.87 KM Plot
PCPG rs75163917 chr16:90081032 T/G 1.12E-8 173 25.77 20.37 6.62 KM Plot
PCPG rs7516737 chr1:212786163 T/C 0.000128 172 25.67 24.23 14.6 KM Plot
PCPG rs7517921 chr1:243856420 T/C 0.000131 175 24.53 27.33 19.87 KM Plot
PCPG rs7517995 chr1:56347686 C/T 1.94E-5 173 25.87 26.57 13.27 KM Plot
PCPG rs75187592 chr2:118548498 G/A 1.62E-5 178 25.17 25.97 11.65 KM Plot
PCPG rs75197080 chr16:71752576 C/G 9.25E-6 175 23.83 32.03 14.5 KM Plot
PCPG rs75217841 chr14:74545918 G/A 0.000221 176 25.28 27.43 10.43 KM Plot
PCPG rs75218563 chr16:71815702 T/C 1.16E-5 174 24.7 29.43 14.5 KM Plot
PCPG rs75265219 chr12:56640341 G/A 9.68E-8 178 25.17 29.13 0.8 KM Plot
PCPG rs75269469 chr10:29847532 T/A 3.99E-11 178 25.53 22.05 10.3 KM Plot